Technical Skills

▶ Research

Study Design & Analysis

Clinical trial design (GCP) Multicenter study coordination Multivariate & survival analysis Population genetics Allocation-policy simulation

Genomics & Immunology

HLA genotyping & probabilistic imputation Organ allocation modeling Transplant immunology Multi-omics integration Viral genomics & phylogenetics

Data Management

Large-scale clinical/registry datasets (SRTR, NMDP, OPTN) PDF-to-structured data extraction REDCap GL String / immunogenetics standards IRB/CITI compliance

Scientific Communication

Peer-reviewed publications Conference presentations (oral & poster) Grant-supporting data analysis Cross-institutional collaboration

▶ Computational

Programming & Languages

Python R SQL Shell Scripting JavaScript HTML/CSS LaTeX

Web Frameworks

Astro Tailwind CSS

Python Stack

pandas NumPy scikit-learn Matplotlib Seaborn Plotly Django

R Stack

tidyverse Bioconductor ggplot2 Seurat DESeq2 edgeR survival lme4

Statistical & Causal Methods

Linear / logistic / LDA / GAM / GLMM (lme4) Kaplan–Meier & Cox proportional hazards Ridge / LASSO / elastic net Bonferroni / Benjamini–Hochberg control DAG-based covariate selection Counterfactual causal mediation IPTW MICE E-value sensitivity Monte Carlo simulation Expectation-maximization (EM) Hardy–Weinberg modeling Organ-allocation simulation (OASIM)

Machine Learning

SVM Decision trees Random forests Gradient boosting Hierarchical / K-means / PAM / mclust clustering PCA / CCA / t-SNE / UMAP CNN / RNN / DNN / GAN Reinforcement learning PyTorch (NVIDIA Deep Learning Workshop, >92% multi-class validation accuracy)

Genomics & Bioinformatics

Bulk RNA-Seq scRNA-Seq (Seurat, Loupe Browser) ATAC-Seq CITE-Seq Spatial transcriptomics foundations Differential expression / GSEA / pathway analysis HLA imputation (haplotype-frequency EM and single-locus) High-resolution HLA typing pipelines HLA population genetics GL String Sequence analysis (MEGA, Clustal W)

Calibration & Validation

Brier score ROC AUC Bin-averaged calibration (MSE, city-block) Typing Resolution Score (TRS) Paynter et al. open-source framework

LLM / AI Engineering

Retrieval-augmented generation (RAG) Vector databases Model Context Protocol (MCP) server development LLM integration (ChatGPT, Claude, Gemini) Text embedding & tokenization

Cloud & DevOps

AWS EC2 (Bitnami) production deployment Docker Git / GitHub CI/CD via GitHub Actions LLM-assisted Nextflow / Snakemake workflow orchestration

HPC & Linux

Cypress (Tulane) LONI (LSU) I2C2 (UPenn) BigPurple (NYU Langone Health) SLURM job submission

Reproducibility & Reporting

FAIR-aligned pipelines Quarto R Markdown Jupyter Typst

Visualization & BI

ggplot2 Matplotlib Seaborn Plotly Power BI Tableau

Tools

VS Code Jupyter Anaconda Cursor AI GitHub Copilot Claude (Opus) Codex Gemini

▶ Laboratory

Animal Research

Transgenic mouse line development IP injections Oropharyngeal inoculation Cardiac blood draws Retro-orbital bleeding Intra-vascular staining BAL Lung tissue digestion

Molecular & Cellular

qPCR FACS Bug-FACS ELISA scRNA-Seq ATAC-Seq CITE-Seq Cell enrichment Cell sorting NGS library preparation

Transgenic Models

CCR7-Cre × Icosl-Flox Il22-eGFP × Rag2 Thy1.1 × Rag2 Il17fThy1.1/B6 Rag2⁻/⁻Il2rg⁻/⁻ (DKO)

▶ Microbiology

Microbiological Techniques

Microscopy (light, fluorescence, phase contrast) Culture techniques Biochemical tests Antibiotic sensitivity assays Clinical microbiology research